UCSC Genome Browser
An omics data consolidator, graphical viewer, and general bioinformatics resource

A genome browser for vertebrate genomes that supports research in comparative genomics, evolution, sequence variation and transcriptional regulation. Ensembl annotate genes, computes multiple alignments, predicts regulatory function and collects disease data

R2 Genomics
A comprehensive, user-friendly platform for analyzing and interpreting genomic data, enabling them to make more informed decisions and advance their research in the field of genomics without the need for bioinformatics or coding expertise

GeneCards®: The Human Gene Database
GeneCards is a searchable, integrative database that provides comprehensive, user-friendly information on all annotated and predicted human genes. The knowledgebase automatically integrates gene-centric data from ~150 web sources, including genomic, transcriptomic, proteomic, genetic, clinical and functional information.

GeneSplicer is a flexible system for detecting splice sites in the genomic DNA of various eukaryotes.

Gene Ontology Annotation (GOA) Database
The GO annotation program aims to provide high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB), RNA molecules from RNACentral and protein complexes from the Complex Portal.

The Genome Aggregation Database (gnomAD) is a resource developed by an international coalition of investigators, with the goal of aggregating and harmonizing both exome and genome sequencing data from a wide variety of large-scale sequencing projects, and making summary data available for the wider scientific community.

Non-coding RNA and RNA-RNA interaction

A comprehensive ncRNA sequence collection representing all ncRNA types from a broad range of organisms

A searchable database of published miRNA sequences and annotation

The experimentally validated microRNA-target interactions database

An online database for miRNA target prediction and functional annotations.

Search for predicted microRNA targets in mammals

Identification of microRNA target sites

Identification of microRNA target sites

An algorithm for finding genomic targets for microRNAs

Expression Database of Human Long non-coding RNAs

Explore public circRNA datasets

A comprehensive database of human circRNA which included more than 140,000 human annotated circRNA from different source

ENCORI (Encyclopedia oRNA Interactomes)
An openly licensed and state-of-the-art platform to facilitate the integrative, interactive and versatile display of, as well as the comprehensive annotation and discovery of, RNA-RNA and protein-RNA interactions

A computationally identifies potential binding sites for RNA binding proteins within circRNAs

CSCD (Cancer-specific circRNAs database)
A database developed for cancer-specific circRNAs

The most comprehensive expression analysis of sRNAs and lncRNAs, the expression patterns of tRFs and snoRNAs from thousands of cancer and normal samples, the correlations between ncRNAs and patients’ survival and the function prediction of ncRNAs in tumor tumorigenesis

A miRNA pathway analysis web-server, providing accurate statistics, while being able to accommodate advanced pipelines. mirPath can utilize predicted miRNA targets (in CDS or 3’-UTR regions) provided by the DIANA-microT-CDS algorithm or even experimentally validated miRNA interactions derived from DIANA-TarBase. These interactions (predicted and/or validated) can be subsequently combined with sophisticated merging and meta-analysis algorithms

A miRNA-centric network visual analytics platform

DAVID (The Database for Annotation, Visualization and Integrated Discovery)
Provides a comprehensive set of functional annotation tools for investigators to understand the biological meaning behind large lists of genes


Protein Atlas
The open access resource for human proteins

To support biomedical and other research by providing comprehensive information about the evolution of protein-coding gene families, particularly protein phylogeny, function and genetic variation impacting that function

A daTabase of RNA binding proteins and AssoCiated moTifs

A computational tool that enables accurate prediction and mapping of RNA binding proteins (RBPs) binding sites on any RNA sequence or list of sequences of interest, provided by the users

UniProt is the world’s leading high-quality, comprehensive and freely accessible resource of protein sequence and functional information.

NCBI resources

BLAST (Basic Local Alignment Search Tool)
BLAST finds regions of similarity between biological sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance

Finding primers specific to your PCR template

Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

GEO (Gene Expression Omnibus) DataSets
This database stores curated gene expression DataSets, as well as original Series and Platform records in the Gene Expression Omnibus (GEO) repository


Various Topics

A comprehensive platform dedicated for metabolomics data analysis via user-friendly, web-based interface

Aging Atlas
Aims to compile large gene expression and regulation datasets created by a range of high-throughput omics technologies and serve as a valuable resource for a range of life science researchers

Ovarian Kaleidoscope Database
Provides information regarding the biological function, expression pattern and regulation of genes expressed in the ovary

bioDBnet (biological DataBase network)
Allows for conversions of identifiers from one database to other database identifiers or annotations

uVeal mElanoma Correlation NeTwORk

the Catalogue of Somatic Mutations In Cancer

A knowledge resource on cell lines